diff --git "a/src/api/routes/applications/\043application_id/commands/index.ts" "b/src/api/routes/applications/\043application_id/commands/index.ts"
index a855b15..86057f5 100644
--- "a/src/api/routes/applications/\043application_id/commands/index.ts"
+++ "b/src/api/routes/applications/\043application_id/commands/index.ts"
@@ -20,6 +20,7 @@
 import { route } from "@spacebar/api";
 import { Request, Response, Router } from "express";
 import { Application, ApplicationCommand, FieldErrors, Snowflake } from "@spacebar/util";
+import { IsNull } from "typeorm";
 
 const router = Router({ mergeParams: true });
 
@@ -110,6 +111,16 @@
 
 		const body = req.body as ApplicationCommandCreateSchema[];
 
+		// Remove commands not present in array
+		const applicationCommands = await ApplicationCommand.find({ where: { application_id: req.params.application_id, guild_id: IsNull() } });
+
+		const commandNamesInArray = body.map((c) => c.name);
+		const commandsNotInArray = applicationCommands.filter((c) => !commandNamesInArray.includes(c.name));
+
+		for (const command of commandsNotInArray) {
+			await ApplicationCommand.delete({ application_id: req.params.application_id, guild_id: IsNull(), id: command.id });
+		}
+
 		for (const command of body) {
 			if (!command.type) {
 				command.type = 1;
diff --git "a/src/api/routes/applications/\043application_id/guilds/\043guild_id/commands/index.ts" "b/src/api/routes/applications/\043application_id/guilds/\043guild_id/commands/index.ts"
index 8e6fb78..111c26f 100644
--- "a/src/api/routes/applications/\043application_id/guilds/\043guild_id/commands/index.ts"
+++ "b/src/api/routes/applications/\043application_id/guilds/\043guild_id/commands/index.ts"
@@ -147,6 +147,16 @@
 
 		const body = req.body as ApplicationCommandCreateSchema[];
 
+		// Remove commands not present in array
+		const applicationCommands = await ApplicationCommand.find({ where: { application_id: req.params.application_id, guild_id: req.params.guild_id } });
+
+		const commandNamesInArray = body.map((c) => c.name);
+		const commandsNotInArray = applicationCommands.filter((c) => !commandNamesInArray.includes(c.name));
+
+		for (const command of commandsNotInArray) {
+			await ApplicationCommand.delete({ application_id: req.params.application_id, guild_id: req.params.guild_id, id: command.id });
+		}
+
 		for (const command of body) {
 			if (!command.type) {
 				command.type = 1;